Package: MBmca 1.0.1

Stefan Roediger

MBmca: Nucleic Acid Melting Curve Analysis

Lightweight utilities for nucleic acid melting curve analysis are important in life sciences and diagnostics. This software can be used for the analysis and presentation of melting curve data from microbead-based assays (surface melting curve analysis) and reactions in solution (e.g., quantitative PCR (qPCR), real-time isothermal Amplification). Further information are described in detail in two publications in The R Journal [ <https://journal.r-project.org/archive/2013-2/roediger-bohm-schimke.pdf>; <https://journal.r-project.org/archive/2015-1/RJ-2015-1.pdf>].

Authors:Stefan Roediger [cre, aut], Michal Burdukiewicz [aut]

MBmca_1.0.1.tar.gz
MBmca_1.0.1.zip(r-4.5)MBmca_1.0.1.zip(r-4.4)MBmca_1.0.1.zip(r-4.3)
MBmca_1.0.1.tgz(r-4.4-any)MBmca_1.0.1.tgz(r-4.3-any)
MBmca_1.0.1.tar.gz(r-4.5-noble)MBmca_1.0.1.tar.gz(r-4.4-noble)
MBmca_1.0.1.tgz(r-4.4-emscripten)MBmca_1.0.1.tgz(r-4.3-emscripten)
MBmca.pdf |MBmca.html✨
MBmca/json (API)

# Install 'MBmca' in R:
install.packages('MBmca', repos = c('https://pcruniversum.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pcruniversum/mbmca/issues

Datasets:
  • DMP - Bimodal melting curve experiment on the surface of microbeads.
  • DualHyb - Surface melting curve data from direct hybridization experiment of short oligonucleotide probes with bimodal melting curve pattern.
  • MultiMelt - Surface melting curve data from direct hybridization experiment of short oligonucleotides.

On CRAN:

4.53 score 4 stars 17 scripts 297 downloads 5 exports 48 dependencies

Last updated 4 years agofrom:def2bb5807. Checks:OK: 4 NOTE: 2 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-winNOTENov 11 2024
R-4.5-linuxNOTENov 11 2024
R-4.4-winOKNov 11 2024
R-4.4-macOKNov 11 2024
R-4.3-winOKNov 11 2024
R-4.3-macERRORNov 11 2024

Exports:diffQdiffQ2mcaPeaksmcaSmootherMFIerror

Dependencies:base64encbslibcachemchipPCRclicommonmarkcrayonDEoptimRdigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclelmtestmagrittrMASSMatrixMatrixModelsmemoisemimeoutlierspromisesptwquantregR6rappdirsRcppRcppArmadilloRcppDERfitrlangrobustbasesassshinysignalsourcetoolsSparseMsurvivalwithrxtablezoo

Microbead Surface Nucleic Acid Melting Curve Analysis

The chipPCR package authors

Rendered fromMBmca.Rmdusingknitr::rmarkdownon Nov 11 2024.

Last update: 2021-03-07
Started: 2021-02-27