Package: MBmca 1.0.1

Stefan Roediger

MBmca: Nucleic Acid Melting Curve Analysis

Lightweight utilities for nucleic acid melting curve analysis are important in life sciences and diagnostics. This software can be used for the analysis and presentation of melting curve data from microbead-based assays (surface melting curve analysis) and reactions in solution (e.g., quantitative PCR (qPCR), real-time isothermal Amplification). Further information are described in detail in two publications in The R Journal [ <https://journal.r-project.org/archive/2013-2/roediger-bohm-schimke.pdf>; <https://journal.r-project.org/archive/2015-1/RJ-2015-1.pdf>].

Authors:Stefan Roediger [cre, aut], Michal Burdukiewicz [aut]

MBmca_1.0.1.tar.gz
MBmca_1.0.1.zip(r-4.5)MBmca_1.0.1.zip(r-4.4)MBmca_1.0.1.zip(r-4.3)
MBmca_1.0.1.tgz(r-4.4-any)MBmca_1.0.1.tgz(r-4.3-any)
MBmca_1.0.1.tar.gz(r-4.5-noble)MBmca_1.0.1.tar.gz(r-4.4-noble)
MBmca_1.0.1.tgz(r-4.4-emscripten)MBmca_1.0.1.tgz(r-4.3-emscripten)
MBmca.pdf |MBmca.html✨
MBmca/json (API)

# Install 'MBmca' in R:
install.packages('MBmca', repos = c('https://pcruniversum.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pcruniversum/mbmca/issues

Datasets:
  • DMP - Bimodal melting curve experiment on the surface of microbeads.
  • DualHyb - Surface melting curve data from direct hybridization experiment of short oligonucleotide probes with bimodal melting curve pattern.
  • MultiMelt - Surface melting curve data from direct hybridization experiment of short oligonucleotides.

On CRAN:

4.53 score 4 stars 17 scripts 278 downloads 5 exports 48 dependencies

Last updated 4 years agofrom:def2bb5807. Checks:4 OK, 2 NOTE, 1 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 10 2025
R-4.5-winNOTEJan 10 2025
R-4.5-linuxNOTEJan 10 2025
R-4.4-winOKJan 10 2025
R-4.4-macOKJan 10 2025
R-4.3-winOKJan 10 2025
R-4.3-macERRORJan 10 2025

Exports:diffQdiffQ2mcaPeaksmcaSmootherMFIerror

Dependencies:base64encbslibcachemchipPCRclicommonmarkcrayonDEoptimRdigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclelmtestmagrittrMASSMatrixMatrixModelsmemoisemimeoutlierspromisesptwquantregR6rappdirsRcppRcppArmadilloRcppDERfitrlangrobustbasesassshinysignalsourcetoolsSparseMsurvivalwithrxtablezoo

Microbead Surface Nucleic Acid Melting Curve Analysis

The chipPCR package authors

Rendered fromMBmca.Rmdusingknitr::rmarkdownon Jan 10 2025.

Last update: 2021-03-07
Started: 2021-02-27