Package: MBmca 1.0.1

Stefan Roediger

MBmca: Nucleic Acid Melting Curve Analysis

Lightweight utilities for nucleic acid melting curve analysis are important in life sciences and diagnostics. This software can be used for the analysis and presentation of melting curve data from microbead-based assays (surface melting curve analysis) and reactions in solution (e.g., quantitative PCR (qPCR), real-time isothermal Amplification). Further information are described in detail in two publications in The R Journal [ <https://journal.r-project.org/archive/2013-2/roediger-bohm-schimke.pdf>; <https://journal.r-project.org/archive/2015-1/RJ-2015-1.pdf>].

Authors:Stefan Roediger [cre, aut], Michal Burdukiewicz [aut]

MBmca_1.0.1.tar.gz
MBmca_1.0.1.zip(r-4.5)MBmca_1.0.1.zip(r-4.4)MBmca_1.0.1.zip(r-4.3)
MBmca_1.0.1.tgz(r-4.4-any)MBmca_1.0.1.tgz(r-4.3-any)
MBmca_1.0.1.tar.gz(r-4.5-noble)MBmca_1.0.1.tar.gz(r-4.4-noble)
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MBmca.pdf |MBmca.html✨
MBmca/json (API)

# Install 'MBmca' in R:
install.packages('MBmca', repos = c('https://pcruniversum.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pcruniversum/mbmca/issues

Datasets:
  • DMP - Bimodal melting curve experiment on the surface of microbeads.
  • DualHyb - Surface melting curve data from direct hybridization experiment of short oligonucleotide probes with bimodal melting curve pattern.
  • MultiMelt - Surface melting curve data from direct hybridization experiment of short oligonucleotides.

On CRAN:

4.51 score 4 stars 16 scripts 312 downloads 5 exports 48 dependencies

Last updated 4 years agofrom:def2bb5807. Checks:OK: 4 NOTE: 2 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 12 2024
R-4.5-winNOTEOct 12 2024
R-4.5-linuxNOTEOct 12 2024
R-4.4-winOKOct 12 2024
R-4.4-macOKOct 12 2024
R-4.3-winOKOct 12 2024
R-4.3-macERROROct 12 2024

Exports:diffQdiffQ2mcaPeaksmcaSmootherMFIerror

Dependencies:base64encbslibcachemchipPCRclicommonmarkcrayonDEoptimRdigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclelmtestmagrittrMASSMatrixMatrixModelsmemoisemimeoutlierspromisesptwquantregR6rappdirsRcppRcppArmadilloRcppDERfitrlangrobustbasesassshinysignalsourcetoolsSparseMsurvivalwithrxtablezoo

Microbead Surface Nucleic Acid Melting Curve Analysis

The chipPCR package authors

Rendered fromMBmca.Rmdusingknitr::rmarkdownon Oct 12 2024.

Last update: 2021-03-07
Started: 2021-02-27