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  "Title": "Nucleic Acid Melting Curve Analysis",
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  "Date": "2021-02-26",
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  "Description": "Lightweight utilities for nucleic acid melting curve\nanalysis are important in life sciences and diagnostics. This\nsoftware can be used for the analysis and presentation of\nmelting curve data from microbead-based assays (surface melting\ncurve analysis) and reactions in solution (e.g., quantitative\nPCR (qPCR), real-time isothermal Amplification). Further\ninformation are described in detail in two publications in The\nR Journal [\n<https://journal.r-project.org/archive/2013-2/roediger-bohm-schimke.pdf>;\n<https://journal.r-project.org/archive/2015-1/RJ-2015-1.pdf>].",
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  "Language": "en-US",
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  "Repository": "https://pcruniversum.r-universe.dev",
  "Date/Publication": "2021-03-08 08:20:12 UTC",
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    "User": "root"
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      "title": "Microbead Surface Nucleic Acid Melting Curve Analysis",
      "topics": [
        "MBmca-package",
        "MBmca"
      ]
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