Package: shinyMolBio 0.4

Konstantin A. Blagodatskikh

shinyMolBio: Molecular Biology Visualization Tools for 'Shiny' Apps

Interactive visualization of 'RDML' files via 'shiny' apps. Package provides (1) PCR plate interface with ability to select individual tubes; (2) amplification/melting plots with fast hiding and highlighting individual curves; (3) 2D allelic discrimination plot.

Authors:Konstantin A. Blagodatskikh [cre, aut]

shinyMolBio_0.4.tar.gz

shinyMolBio_0.4.tar.gz(r-4.4-noble)
shinyMolBio_0.4.tgz(r-4.4-emscripten)shinyMolBio_0.4.tgz(r-4.3-emscripten)
shinyMolBio.pdf |shinyMolBio.html✨
shinyMolBio/json (API)

# Install 'shinyMolBio' in R:

install.packages('shinyMolBio', repos = c('https://pcruniversum.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pcruniversum/shinymolbio/issues

On CRAN:

pcr qpcr rdml shiny visualization

8 exports 6 stars 1.18 score 92 dependencies 13 scripts 229 downloads

Last updated 4 years agofrom:6de5b243f7. Checks:OK: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 10 2024

Exports:pcrPlateInput renderADplot renderAmpCurves renderMeltCurves runExample updateADplot updateCurves updatePcrPlateInput

Dependencies:askpass backports base64enc bslib cachem cellranger checkmate cli colorspace commonmark cpp11 crayon crosstalk curl data.table digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 glue gtable highr hms htmltools htmlwidgets httpuv httr isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle lubridate magrittr MASS Matrix memoise mgcv mime munsell nlme openssl pillar pipeR pkgconfig plotly prettyunits progress promises purrr R6 rappdirs RColorBrewer Rcpp RDML readxl rematch rlang rlist rmarkdown sass scales shiny sourcetools stringi stringr sys tibble tidyr tidyselect timechange tinytex utf8 vctrs viridisLite whisker withr xfun XML xml2 xtable yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create a PCR plate input control	pcrPlateInput
Printing adPlot	print.adPlot
Printing pcrCurves	print.pcrCurves
Printing PCR plate input control	print.pcrPlate
Renders an allelic discrimination viewer	renderADplot
Renders an amplification curves viewer	renderAmpCurves
Renders a melting curves viewer	renderMeltCurves
Run shinyMolBio Example Applications	runExample
Change the value of a render ADplot control on the client	updateADplot
Change the value of a render PCR curves control on the client	updateCurves
Change the value of a PCR plate input control on the client	updatePcrPlateInput