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  "Package": "RDML",
  "Type": "Package",
  "Title": "Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format\nFiles",
  "Version": "1.3",
  "Date": "2024-07-31",
  "Description": "Imports real-time thermo cycler (qPCR) data from Real-time\nPCR Data Markup Language (RDML) and transforms to the\nappropriate formats of the 'qpcR' and 'chipPCR' packages.\nContains a dendrogram visualization for the structure of RDML\nobject and GUI for RDML editing.",
  "Authors@R": "c(\nperson(\"Konstantin A.\", \"Blagodatskikh\",\nemail = \"k.blag@yandex.ru\", role = c(\"cre\", \"aut\")),\nperson(\"Stefan\", \"Roediger\",\nemail = \"stefan.roediger@b-tu.de\",\nrole = \"aut\"),\nperson(\"Michal\", \"Burdukiewicz\",\nemail = \"michalburdukiewicz@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8926-582X\"),\nrole = \"aut\"),\nperson(\"Andrej-Nikolai\", \"Spiess\",\nemail = \"a.spiess@uke.de\", role = \"aut\"))",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/PCRuniversum/RDML",
  "Collate": "'RDML.types.R' 'RDML.R' 'RDML.AsDendrogram.R' 'RDML.AsTable.R'\n'RDML.GetFData.R' 'RDML.Merge.R' 'RDML.SetFData.R'\n'RDML.init.R' 'functional_wrappers.R' 'rdmlEdit.R'",
  "RoxygenNote": "7.3.1",
  "Config/pak/sysreqs": "libicu-dev libxml2-dev",
  "Repository": "https://pcruniversum.r-universe.dev",
  "Date/Publication": "2024-08-30 12:26:25 UTC",
  "RemoteUrl": "https://github.com/pcruniversum/rdml",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-18 07:53:44 UTC",
    "User": "root"
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  "Author": "Konstantin A. Blagodatskikh [cre, aut],\nStefan Roediger [aut],\nMichal Burdukiewicz [aut] (ORCID:\n<https://orcid.org/0000-0001-8926-582X>),\nAndrej-Nikolai Spiess [aut]",
  "Maintainer": "Konstantin A. Blagodatskikh <k.blag@yandex.ru>",
  "_user": "pcruniversum",
  "_type": "src",
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  "_published": "2026-09-18T08:25:41.343Z",
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  "_topics": [
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    "extra/citation.json",
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      "date": "2014-09-10"
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      "date": "2015-04-07"
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    "adpsType",
    "annotationType",
    "AsDendrogram",
    "AsTable",
    "cdnaSynthesisMethodType",
    "commercialAssayType",
    "cqDetectionMethodType",
    "dataCollectionSoftwareType",
    "dataType",
    "documentationType",
    "dyeType",
    "experimenterType",
    "experimentType",
    "GetFData",
    "gradientType",
    "idReferencesType",
    "idType",
    "labelFormatType",
    "lidOpenType",
    "loopType",
    "mdpsType",
    "measureType",
    "MergeRDMLs",
    "nucleotideType",
    "oligoType",
    "pauseType",
    "pcrFormatType",
    "primingMethodType",
    "quantityType",
    "quantityUnitType",
    "RDML",
    "rdmlEdit",
    "rdmlIdType",
    "reactIdType",
    "reactType",
    "runType",
    "sampleType",
    "sampleTypeType",
    "sequencesType",
    "SetFData",
    "stepType",
    "targetType",
    "targetTypeType",
    "temperatureType",
    "templateQuantityType",
    "thermalCyclingConditionsType",
    "xRefType"
  ],
  "_help": [
    {
      "page": "extractdatapoints-method",
      "title": "Extract data points from 'RDML' object",
      "topics": [
        "[.GetFData",
        "[.RDML"
      ]
    },
    {
      "page": "adpsType",
      "title": "adpsType R6 class.",
      "topics": [
        "adpsType"
      ]
    },
    {
      "page": "annotationType",
      "title": "annotationType R6 class.",
      "topics": [
        "annotationType"
      ]
    },
    {
      "page": "ascharacteridType-method",
      "title": "Convert 'idType' object to 'character'",
      "topics": [
        "as.character.idType"
      ]
    },
    {
      "page": "ascharacterreactIdType-method",
      "title": "Convert 'reactIdType' object to 'character'",
      "topics": [
        "as.character.reactIdType"
      ]
    },
    {
      "page": "AsDendrogram-function",
      "title": "'RDML$AsDendrogram()' wrapper",
      "topics": [
        "AsDendrogram"
      ]
    },
    {
      "page": "astable-function",
      "title": "'RDML$AsTable()' wrapper",
      "topics": [
        "AsTable"
      ]
    },
    {
      "page": "baseTemperatureType",
      "title": "baseTemperatureType R6 class.",
      "topics": [
        "baseTemperatureType"
      ]
    },
    {
      "page": "cdnaSynthesisMethodType",
      "title": "cdnaSynthesisMethodType R6 class.",
      "topics": [
        "cdnaSynthesisMethodType"
      ]
    },
    {
      "page": "commercialAssayType",
      "title": "commercialAssayType R6 class.",
      "topics": [
        "commercialAssayType"
      ]
    },
    {
      "page": "cqDetectionMethodType",
      "title": "cqDetectionMethodType R6 class.",
      "topics": [
        "cqDetectionMethodType"
      ]
    },
    {
      "page": "dataCollectionSoftwareType",
      "title": "dataCollectionSoftwareType R6 class.",
      "topics": [
        "dataCollectionSoftwareType"
      ]
    },
    {
      "page": "dataType",
      "title": "dataType R6 class.",
      "topics": [
        "dataType"
      ]
    },
    {
      "page": "documentationType",
      "title": "documentationType R6 class.",
      "topics": [
        "documentationType"
      ]
    },
    {
      "page": "dyeType",
      "title": "dyeType R6 class.",
      "topics": [
        "dyeType"
      ]
    },
    {
      "page": "enumType",
      "title": "enumType R6 class.",
      "topics": [
        "enumType"
      ]
    },
    {
      "page": "experimenterType",
      "title": "experimenterType R6 class.",
      "topics": [
        "experimenterType"
      ]
    },
    {
      "page": "experimentType",
      "title": "experimentType R6 class.",
      "topics": [
        "experimentType"
      ]
    },
    {
      "page": "GetFData-function",
      "title": "'RDML$GetFData()' wrapper",
      "topics": [
        "GetFData"
      ]
    },
    {
      "page": "gradientType",
      "title": "gradientType R6 class.",
      "topics": [
        "gradientType"
      ]
    },
    {
      "page": "idReferencesType",
      "title": "idReferencesType R6 class.",
      "topics": [
        "idReferencesType"
      ]
    },
    {
      "page": "idType",
      "title": "idType R6 class.",
      "topics": [
        "idType"
      ]
    },
    {
      "page": "labelFormatType",
      "title": "labelFormatType R6 class.",
      "topics": [
        "labelFormatType"
      ]
    },
    {
      "page": "lidOpenType",
      "title": "lidOpenType R6 class.",
      "topics": [
        "lidOpenType"
      ]
    },
    {
      "page": "loopType",
      "title": "loopType R6 class.",
      "topics": [
        "loopType"
      ]
    },
    {
      "page": "mdpsType",
      "title": "mdpsType R6 class.",
      "topics": [
        "mdpsType"
      ]
    },
    {
      "page": "measureType",
      "title": "measureType R6 class.",
      "topics": [
        "measureType"
      ]
    },
    {
      "page": "MergeRDMLs",
      "title": "Merges 'RDML' objects",
      "topics": [
        "MergeRDMLs"
      ]
    },
    {
      "page": "new-method",
      "title": "Creates new instance of 'RDML' class object",
      "topics": [
        "new",
        "RDML.new"
      ]
    },
    {
      "page": "nucleotideType",
      "title": "nucleotideType R6 class.",
      "topics": [
        "nucleotideType"
      ]
    },
    {
      "page": "oligoType",
      "title": "oligoType R6 class.",
      "topics": [
        "oligoType"
      ]
    },
    {
      "page": "pauseType",
      "title": "pauseType R6 class.",
      "topics": [
        "pauseType"
      ]
    },
    {
      "page": "pcrFormatType",
      "title": "pcrFormatType R6 class.",
      "topics": [
        "pcrFormatType"
      ]
    },
    {
      "page": "primingMethodType",
      "title": "primingMethodType R6 class.",
      "topics": [
        "primingMethodType"
      ]
    },
    {
      "page": "quantityType",
      "title": "quantityType R6 class.",
      "topics": [
        "quantityType"
      ]
    },
    {
      "page": "quantityUnitType",
      "title": "quantityUnitType R6 class.",
      "topics": [
        "quantityUnitType"
      ]
    },
    {
      "page": "RDML",
      "title": "R6 class 'RDML' - contains methods to read and overview fluorescence data from RDML v1.1 and v1.2 format files",
      "topics": [
        "RDML"
      ]
    },
    {
      "page": "asdendrogram-method",
      "title": "Represents structure of 'RDML' file as dendrogram",
      "topics": [
        "RDML.AsDendrogram"
      ]
    },
    {
      "page": "astable-method",
      "title": "Represents fields of 'RDML' object as 'data.frame'",
      "topics": [
        "RDML.AsTable"
      ]
    },
    {
      "page": "getfdata-method",
      "title": "Gets fluorescence data vectors from 'RDML' object",
      "topics": [
        "RDML.GetFData"
      ]
    },
    {
      "page": "setfdata-method",
      "title": "Sets fluorescence data vectors to 'RDML' object",
      "topics": [
        "RDML.SetFData"
      ]
    },
    {
      "page": "rdmlBaseType",
      "title": "Base R6 class for RDML package.",
      "topics": [
        "rdmlBaseType"
      ]
    },
    {
      "page": "rdmlEdit",
      "title": "RDML Editor Graphical User Interface",
      "topics": [
        "rdmlEdit"
      ]
    },
    {
      "page": "rdmlIdType",
      "title": "rdmlIdType R6 class.",
      "topics": [
        "rdmlIdType"
      ]
    },
    {
      "page": "reactIdType",
      "title": "reactIdType R6 class.",
      "topics": [
        "reactIdType"
      ]
    },
    {
      "page": "reactType",
      "title": "reactType R6 class.",
      "topics": [
        "reactType"
      ]
    },
    {
      "page": "runType",
      "title": "runType R6 class.",
      "topics": [
        "runType"
      ]
    },
    {
      "page": "sampleType",
      "title": "sampleType R6 class.",
      "topics": [
        "sampleType"
      ]
    },
    {
      "page": "sampleTypeType",
      "title": "sampleTypeType R6 class.",
      "topics": [
        "sampleTypeType"
      ]
    },
    {
      "page": "sequencesType",
      "title": "sequencesType R6 class.",
      "topics": [
        "sequencesType"
      ]
    },
    {
      "page": "setfdata-function",
      "title": "'RDML$SetFData()' wrapper",
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        "stepType"
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      "topics": [
        "targetType"
      ]
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      "topics": [
        "targetTypeType"
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    },
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      "topics": [
        "temperatureType"
      ]
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      "topics": [
        "templateQuantityType"
      ]
    },
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      "title": "thermalCyclingConditionsType R6 class.",
      "topics": [
        "thermalCyclingConditionsType"
      ]
    },
    {
      "page": "xRefType",
      "title": "xRefType R6 class.",
      "topics": [
        "xRefType"
      ]
    }
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